Lab Orders

Regular Lab Supplies

Radioisotope Orders

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General Methods

Denaturing PAGE Gel Composition

Denaturing PAGE Gel Power Settings

SDS PAGE Gel

Preparation of DH5alpha Competent Cells

Cesium chloride Plasmid Prep

DNA Sequencing

Synthetic DNA Deprotection

Synthetic RNA Deprotection

Desalting Oligos with C18 SepPak Column

In vitro Transcription Reactions

Standard Transcription Reaction

ASL Transcription Reaction

tRNA Transcription Reaction

16S rRNA Transcription

RNA Methods

Overexpression and Purification of Native tRNA Phe

Formylation and Aminoacylation of tRNA fMet

N-Acetylation of Aminoacylated tRNA

Determining the Efficiency of Aminoacylation

Acid-Urea Gel analysis

Labeling mRNA with Pyrene

Purifying Phosphorothioate RNA

Assigning Rp Vs Sp stereoisomer of Phosphorothioate RNA

Ribosome Methods

Calculating the concentration of Ribosome

Purifying Tight-Couple 70S Ribosomes from E. coli MRE600 (Do NOT USE! see below)

Purifying Tight-Couple 70S Ribosome from E. coli MRE600 WITH EXTRA SALT WASH (USE THIS!!!)

Purifying 30S and 50S Ribosomal Subunits

Subunit Association

Polysome Analysis

Purifying MS2-GST

Purifying MS2-Tagged 30S subunits

Purifying U1A-Tagged 50S subunits

Purifying MS2-Tagged 50S subunits

Determining the Purity of MS2-Tagged Ribosome

Purifying TP30 and TP50

Two-Dimensional Protein Gel Analysis

In vitro Reconstitution of the 30S subunit

Standard Chemical Modification of Ribosomes

ENU Modification of RNA

Fe-BABE Modification of RNA

Primer Extension Analysis of rRNA

Primers for 16S and 23S rRNAs

rRNA Sequences: 16S rRNA 16S-MS2 23S rRNA 23S-MS2 pKK3535

Preparation of S-100 Extract

In vitro Translation of Renilla Luciferase (see Update 1)

Renilla Luciferase Update1

Native Gel Analysis of EF-Tu-GTP-aatRNA Ternary Complex

tRNA Filter binding

Toeprinting Assay for Translocation

Attaching Fluorescent dye to Protein

 

 

Protein Purification

Purification of His-Tagged T7 RNA Polymerase

Purification of EF-Tu using IMPACT Method

Purification of EF-G using IMPACT Method

Purification of His-Tagged RF1

Protease Inhibition Guide

Instruments

Scintillation Counter

Fluoromax 3 Instructions

Rapid Kinetic Methods

Stopped-Flow Instructions

Determining the Dead Time of the Stopped-Flow (Reaction of NATA with NBS)

Rate of Translocation

Rate of EF-Tu ternary complex binding to Ribosome

Stopped-Flow Anisotropy Measurement (Tech note 38)

Quench-Flow Instructions

Quench-Flow Test Reaction (Hydrolysis of DNPA)

Rate of Puromycin Reaction

Rate of fMet-Phe Dipeptide Reaction

Rate of GTP hydrolysis by EF-G

Rate of GTP hydrolysis by EF-Tu Ternary complex

Analysis of Kinetic Data

Recommended Reading

Enzyme Kinetics

Johnson (JBC 2008)

Johnson 1992 (The Enzymes Vol XX)

Williamson (NSMB 2008)

Copeland (Biochemistry) 2008

Fluorescence

Johnson 1998 (Molecular Probes)

Raines 2008 (ACS Chemical Biology Review) CHART TABLE

Lifetime of Selected Fluorophores

Company Protocols and Handbooks

Laboratory Bench Guide

RNA guidelines

Bacterial growth and storage

Quickchange

In vitro transcription

Amine modification

Equilibrium dialysis

Phosphor Imager Screen

Fluorescence Anisotropy

Molecular Beacon

Protein Purification

IMPACT protein purification

His Tagged protein purification

GST Tagged protein purification

QIAexpressionist

Competent cells

pET expression manual

Protein purification handbook

Recombinant protein purification handbook

Affinity purification handbook

Ion exchange purification handbook

Hydrophobic and Reverse phase handbook

Gel filtration handbook

AKTA Purifier Quick Guide